agricultural research

Want to fly drones? New Remote Pilot Licence training course available

Ramesh and drone cropped

Dr Ramesh Raja Segaran from APPF partner, URAF

The Unmanned Research Aircraft Facility (URAF) at the University of Adelaide, is offering a commercial drone course leading to the award of a Remote Pilot Licence (RePL) by the Civil Aviation Safety Authority of Australia (CASA).

This five-day intensive RePL course is conducted on University of Adelaide campuses by a team of CASA-certified drone operators and trainers from the University.

Course inclusions

  • All required theory and practical syllabus and requirements of CASA for a RePL.
  • Aeronautical Radio Operator Certificate (AROC).
  • English Language Proficiency certification (ELP).
  • Textbook: Remote Pilot Licence RePL Study Guide by Bob Tait and Ben Harris.
  • In-house examinations for ELP, AROC and RePL.

Assured quality teaching

Courses available

The URAF run regular RePL courses 4-6 times a year. Ad hoc RePL courses for government and industry groups are also available.

  • Remote Pilot Licence Course, Multi-rotor up to 7kg
    • $3500 + GST (includes textbook and application fees for RePL, AROC, ELP)
  • Practical type training for Multi-rotor/ Fixed wing up to 25kg
  • Others
    • If you have passed an aeronautical knowledge exam for a flight crew licence (e.g. PPL/ CPL), you can complete practical type training with the URAF to get type rated for a RePL.

Who needs a RePL?

Please contact the URAF for more information on the courses and how to enrol.

Invitation: ‘Drones in research’ webinar series

Ramesh Booleroo field Drone flight 2 (edited)

Dr Ramesh Raja Segaran from APPF partner, URAF, demonstrating field phenotyping with a drone

Australian National Data Service (ANDS) is running two webinars on ‘Drones in Research’ this July. The webinars are free of charge and open to anybody who uses drones for research, or has an interest in doing so. They will be of particular interest to:

  • Researchers (academia, industry and government)
  • Data managers and data librarians
  • Data scientists, analysts, developers and technologists
  • Environmental and geo-scientific research data community
  • Research Office, Ethics Committee members and Legal Counsel for institutions

 

  • Webinar #1:  An eye on legal, ethics, safety & privacy
    When:  Thursday, 20 July 2017 at 12.30pm AEST (one hour duration)
    Description:  When deploying drones for research, it is important to be aware of legal and privacy issues under current Australian law, and have an understanding of public safety and community attitude.

    Speakers:  Melanie Olsen, AIMSA requirement of special licensing from CASA for drone useDes Butler, QUTThe privacy implication of using drones under current Australian lawLeanne Wiseman, Griffith UniversityDrones and geospatial data: A look at the legal and ethical issues [IP and copyright].

  • Webinar #2:  Rise of drones in the Australian research space
    When:  Thursday, Thursday 27 July 2017 at 12.30 AEST (one hour duration)Description:  This second webinar brings together researchers and data specialists from various disciplines to showcase their drone applications and data expertise, and to share knowledge to enhance research capabilities.

    Speakers:  Siddeswara Guru, TERN – Making drone data open for scientific research – Kim Bryceson, QUT – Automation of drone data capture in agriculture and development of GIS data library – Third speaker TBC.

The webinars are free, however, registration is required.

Both webinars will be recorded. If you can’t attend, please do register and ANDS will send you the recording and additional links.

Click here for more information and to register.

The Australian Plant Phenomics Facility (APPF) and ANDS are part of a community of facilities supported by the National Collaborative Research Infrastructure Strategy (NCRIS). The NCRIS network currently supports national research capability through 27 active projects and is comprised of 222 institutions employing well over 1,700 highly skilled technical experts, researchers and facility managers. NCRIS facilities are used by over 35,000 researchers, both domestically and internationally.

International consortia tackle the global challenge to increase wheat yields at the APPF

Field of ripe wheat

Two international consortia of scientists from the United States, Great Britain, Mexico and Australia are currently carrying out research projects of global importance at the Australian Plant Phenomics Facility’s (APPF) Adelaide node for the International Wheat Yield Partnership (IWYP).

The first research project, Improving Yield by Optimising Energy Use Efficiency, is phenotyping an Excalibur x Kukri RIL population to determine genetics controlling energy use efficiency (EUE) in wheat. The aim is to identify genetic loci and markers to enable breeding of high-yielding germplasm with:

  • low rates of leaf respiratory CO2 released per unit growth,
  • optimised levels of sugars, organic and amino acids for growth, and
  • increased biomass at anthesis.

More than 85-90% of the energy captured by plants is used in high-cost cellular processes, such as transport of nutrients and respiration, meaning about only 10-15% is allocated to yield. Thus, any small gain in energy redistribution and use for a costly process can have a marked positive impact on biomass accumulation and yield.

Improvements in EUE can be achieved at the cell, tissue and whole-plant level, with respiration being a prime target.

“Our initial screening of 138 Australian commercial cultivars revealed a two-fold variation in rates of leaf respiration, three-fold variation in the ratio of respiration to growth rate during early development, and significant heritability of 35%. This demonstrates there is untapped genetic variation in EUE amenable to fine-tuning and optimisation of biomass accumulation in the lead-up to anthesis, with concomitant positive knock-on effects on yield”, said Australian National University’s Barry Pogson, Project Lead and Director of the ARC Centre of Excellence in Plant Energy Biology (AUS).

The project has partners at University of Western Australia (AUS), CIMMYT (MEX) and  the University of Adelaide (AUS).

The second research project, AVP1, PSTOL1 and NAS – Three High-Value Genes for Higher Wheat Yield, aims to enhance wheat yield by exploiting and building synergy of three high value genes (AVP1, PSTOL1 and NAS) and enabling molecular breeding by:

  • developing two-gene and three-gene pyramiding combinations of AVP1, PSTOL1 and NAS using available transgenic wheat lines and quantifying the additive effects on yield in multi-location field and greenhouse trials (as a proof of concept),
  • identifying wheat orthologs and allelic variants of TaAVP1, TaPSTOL1 and TaNAS, and designing molecular markers to the best alleles for marker-assisted breeding,
  • providing basic understanding of the physiological and molecular mechanisms behind improved yield and selecting wheat lines with the best allelic combination and field performance, and
  • assessing the necessity for using genome editing technologies to optimise gene function and enhance positive effect on wheat yield by modifying expression of the wheat alleles.

The genes Vacuolar Proton Pyrophosphatase 1 (AVP1), Phosphorus Starvation Tolerance 1 (PSTOL1) and Nicotianamine Synthase (NAS) have been shown to improve plant biomass production and grain yield. Over-expression of these genes results in improved biomass production and grain yield in a range of plant species, including cereals (rice, barley, wheat), in optimal growing conditions. The enhanced yield of the plants is believed to be due to improved sugar transport from source to sinks (AVP1), enhanced root growth and nutrient uptake (AVP1, PSTOL1) and increase in shoot biomass and tiller number (AVP1, PSTOL1, NAS2).

“Identifying and pyramiding the wheat orthologues of these high-value genes provides a real opportunity to produce wheat with significantly improved field performance and higher grain yield,” said Project Lead, Stuart Roy, from the University of Adelaide (AUS).

The project has partners at University of Melbourne (AUS), Arizona State University (USA), Cornell University (USA), University of California, Riverside (USA) and Rothamsted Research (GBR).

These extensive projects will continue throughout 2017 and into 2018.

 

Why is this research so important?

Wheat is the most widely grown of any crop globally, providing 20% of daily calories and protein. By 2050 wheat demand is expected to increase by 60%. To meet this demand, annual potential wheat yield increases must effectively double – an exceptional challenge.

In November 2012, funding agencies and organisations from the G20 countries agreed to work together and formed the global Wheat Initiative to develop a strategic approach to supporting research that would lead to dramatically increasing the genetic yield potential of wheat.

An essential pillar of this strategy is the International Wheat Yield Partnership (IWYP), a novel collaborative approach, enabling the best scientific teams from across the globe to work together in an integrated program to address the challenge of raising the genetic yield potential of wheat by up to 50% in the next two decades all over the world. IWYP builds on the initial research concepts of the Wheat Yield Consortium established by CIMMYT.

To deliver increased wheat yield, a combination of fundamental bioscience and applied research will be needed. IWYP will deliver this through a focused program of research to develop new knowledge, models and wheat lines suited to multiple environments ensuring global gains in wheat yields are achieved.

IWYP will target six key research scope areas:

  • uncovering genetic variation that creates the differences in carbon fixation and partitioning between wheat lines,
  • harnessing genes from wheat and other species through genetic modification to boost carbon capture and fixation to increase biomass production,
  • optimising wheat development and growth to improve grain yields and harvest index,
  • developing elite wheat lines for use in other breeding programs,
  • building on discoveries in wheat relatives and other species, and
  • fostering breakthrough technology development that can transform wheat breeding.

The “IWYP Science Program” provides a unique plan to generate new discoveries and provides for their rapid incorporation into wheat crops grown throughout the world. IWYP’s overarching aims are to stimulate new research, amplify the output from existing programs and make scientific discoveries available to farmers in developing and developed nations.

 

The Australian Plant Phenomics Facility

The APPF provides state-of-the-art phenotyping tools and expertise to help academic and commercial plant scientists from Australia and around the world understand and relate the performance of plants to their genetic make-up. Research facilitated at the APPF is leading to the development of new and improved crops, more sustainable agricultural practices, improved maintenance and regeneration of biodiversity in the face of declining arable land area and the challenges of climate change. Our services.

Do you need access to plant phenotyping capabilities? The PIEPS scheme can help!

Do you have an exceptional plant science research project destined to deliver high impact outcomes for agriculture? The Phenomics Infrastructure for Excellence in Plant Science (PIEPS) scheme was announced in May and is open to all publicly funded researchers. Emphasis is placed on novel collaborations that bring together scientists preferably from different disciplines (e.g. plant physiology, computer science, engineering, biometry, quantitative genetics, molecular biology, chemistry, physics) and from different organisations, within Australia or internationally, to focus on problems in plant science.

The PIEPS scheme involves access to phenotyping capabilities at the Australian Plant Phenomics Facility (APPF) at a reduced cost to facilitate exceptional research projects. Researchers will work in partnership with the APPF to determine experimental design and optimal use of the equipment. Our team includes experts in agriculture, plant physiology, biotechnology, genetics, horticulture, image and data analysis, mechatronic engineering, computer science, software engineering, mathematics and statistics.

Applications are assessed in consultation with the APPF’s independent Scientific Advisory Board. Selection is based on merit.

Don’t miss this an outstanding opportunity to gain access to invaluable expertise and cutting edge technology to accelerate your research project and make a real impact in plant science discovery.

Applications close:  30 September 2017

For more information and to applyAPPF Phenomics Infrastructure for Excellence in Plant Science (PIEPS).

To find out how the APPF can support your research, contact us.

Learn more about projects at the Australian Plant Phenomics Facility and keep in touch.

 

 

Decadal Plan for Australian Agricultural Sciences 2017-2026 released

Grow. Make. Prosper. The Decadal Plan for Australian Agricultural Sciences was published in June 2017 and presents the strategic vision for Australian Agricultural Sciences in the next decade.

The plan outlines strategies to improve the strength and efficiency of agricultural research in Australia in ways that will increase the ability of governments and producers to maintain productivity and efficiency in the face of evolving natural challenges. Successfully identifying, developing and deploying the next generation of game-changing scientific advances remains an active and ongoing challenge. The plan also outlines strategies to capitalise on emerging technologies that will affect the agricultural sciences.

PhenomobileLite_16_JamieScarrow (sm)

Agriculture is vitally important to Australia’s economy and social fabric, and contributes to global health and wellbeing. It faces a range of challenges across biophysical, economic and social arenas. Opportunities for technological and production improvements are continuously being identified from scientific research. However, to attain step change improvements in profitability, productivity and sustainability into the future will require integrated multidisciplinary research underpinned by a well-resourced science research pipeline.

The Australian Plant Phenomics Facility plays a key role in supporting the next generation of agricultural research designed to answer some of these challenges. This month we will meet with colleagues from fellow NCRIS facilities TERN, BPA, ALA, NeCTAR and NCI to explore opportunities for collaboration, determine where overlaps or synergies occur and discuss bigger picture ideas to ensure NCRIS funding is used most effectively.

Read the full Decadal Plan for Australian Agricultural Sciences (2017-2026) here.

Find out more about the APPF here.

National National Collaborative Research Infrastructure Strategy (NCRIS)

Terrestrial Ecosystem Research Network (TERN)

Bioplatforms Australia (BPA)

Australian Atlas of Living (ALA)

National eResearch Collaboration Tools and Resources (NeCTAR)

National Computational Infrastructure (NCI)

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This is your chance! An invaluable opportunity to access phenotyping capabilities to further your plant science research

Do you have an exceptional plant science research project destined to deliver high impact outcomes for Australian agriculture? Do you need access to plant phenotyping capabilities?

The Phenomics Infrastructure for Excellence in Plant Science (PIEPS) scheme was announced in May and is open to all publicly funded researchers. Emphasis is placed on novel collaborations that bring together scientists preferably from different disciplines (e.g. plant physiology, computer science, engineering, biometry, quantitative genetics, molecular biology, chemistry, physics) and from different organisations, within Australia or internationally, to focus on problems in plant science.

The PIEPS scheme involves access to phenotyping capabilities at the Australian Plant Phenomics Facility (APPF) at a reduced cost to facilitate exceptional research projects. Researchers will work in partnership with the APPF to determine experimental design and optimal use of the equipment. Our team includes experts in agriculture, plant physiology, biotechnology, genetics, horticulture, image and data analysis, mechatronic engineering, computer science, software engineering, mathematics and statistics.

Applications are assessed in consultation with the APPF’s independent Scientific Advisory Board. Selection is based on merit.

Don’t miss this an outstanding opportunity to gain access to invaluable expertise and cutting edge technology to accelerate your research project and make a real impact in plant science discovery.

Applications close:  30 September 2017

For more information and to apply:  APPF Phenomics Infrastructure for Excellence in Plant Science (PIEPS)

To find out how we can support your research, contact us.

Taking five with… Michael Schaefer

The three national nodes of the Australian Plant Phenomics Facility (APPF) are home to a highly talented team of plant science researchers and specialists. This passionate, cross-disciplinary team is skilled in areas such as agriculture, plant physiology, biotechnology, genetics, horticulture, image and data analysis, mechatronic engineering, computer science, software engineering, mathematics and statistics. But who are they?

Today we take five minutes to get to know…

Michael Schaefer, PhD

Tell us a little about where you work within the APPF.

I am based at the CSIRO node of the APPF in Canberra. This centre focuses on “deep phenotyping” (delving into metabolism and physiological processes within the plant) and “reverse phenomics” (dissecting traits to discover their mechanistic basis). Here, next generation research tools are being developed and applied to probe plant function and performance, under controlled conditions and in the field.

What do you do there?

I’m a Research Scientist and Team Leader of the Translational Phenomics and Services team. My team looks after all of the new projects that come into our node of the APPF, from dealing with clients directly, to designing experiments based on the client’s needs, right through to providing the final data products and support with analysis.

What is the best part of your job?

As one of the newest team members, the best part of my job has been meeting and working with new people and dealing with new projects in different plants and crops. Every case is different, so designing and running each project is unique which provides a lot of variety.

Where do you see plant phenomics research in 5-10 years time?

I think in 5-10 years’ time plant phenomics research will be very different. We can already see that sensors and technology are getting smaller, faster and cheaper. I think much of what we do with large sensors (lidar for example) will be replaced by much smaller handheld devices or drones that will process data on the fly and give you a result straight away. This will affect all areas of science, not just plant science, so I think it will just be something that we have to adjust to.

“The moment I realised I loved plant science was…”

Somewhere during my undergraduate degree. I was doing straight science, biology, chemistry and physics – very broad – and then I started making links with how physics could be related to the environment (i.e. plants etc.). This seemed to make more sense to me, as I could see the application and how it could directly affect people now, rather than working on something theoretical that may or may not ever be used.

If you could solve one plant science question, what would it be?

For me, I’m really interested in pastures, so it would be the holy grail to be able to accurately, remotely measure above-ground biomass and split it into the green and senesced fractions.

Pic of Michael Schaefer for blog

Michael Schaefer at the western entry of Angkor Wat, Cambodia

“When I am not working I am…”

At home spending time with my wife Ali and daughter Emilia, or outdoors playing cricket, golf or fishing.

If you could have one super power, what would it be?

Good question…. being able to bend time and space like Dr. Strange. That would be pretty cool!

“If I wasn’t a plant scientist I would be a…”

Fishing guide!

What is your most treasured possession?

They’re not a possession but my family are the most important to me.

If you could have dinner with two famous people who would they be?

Barack Obama and Tiger Woods.

What’s the one thing about you that would surprise people?

I have my private aeroplane pilot licence. I did my pilot training while I was doing my PhD – not that I get to fly much these days.

The APPF provides academic and commercial researchers with expert advice and access to high quality plant growth facilities and state-of-the-art automated phenotyping capabilities in controlled environments and in the field. We provide a suite of analytical tools to support high-throughput phenotyping and deep phenotyping in either controlled environments or in the field. Our dedicated team of experts provide consultation on project design and high quality customer support. If you would like to know more about our services and how we can support your plant science research, please contact us!

Spreading the word on great plant science

The Australian Plant Phenomics Facility (APPF) will appear in the media twice this week, promoting the importance of plant science.

The Stock Journal ran an article today (27 April) featuring our very own Dr Trevor Garnett on the front cover, talking about the importance of investment in agricultural research and the services available to scientists at the APPF.

The Adelaide node of the APPF will also feature on Channel 9’s television show “South Aussie with Cosi” which will air this Friday (28 April) at 8pm as part of a feature on the history and incredibly important research undertaken within the Waite Research Precinct. The segment can be viewed online here (2:30min).Trevor_Stock Journal paper clips